Module 39-Inf-BDS Biomedical Data Science for Modern Healthcare Technology

Faculty

Person responsible for module

Regular cycle (beginning)

Every winter semester

Credit points and duration

10 Credit points

For information on the duration of the modul, refer to the courses of study in which the module is used.

Competencies

Non-official translation of the module descriptions. Only the German version is legally binding.

The lecture puts the emphasis on data science techniques that are of actual relevance in biomedicine and health care. Important examples are the efficient administration of great amounts of patient data and their safe sharing, the involvement of of individual genetic patient records in clinical decision support processes, or the clinically effective evaluation of wearables. The seminar focuses on understanding, interpreting and evaluating scientific literature relating to topics treated in the lecture: the identification of issues that are critical in terms of data science, understanding how solutions can be developed, and understanding the (likely tricky) solutions themselves; last, gauging the range of open questions that remain. In the presentation, we will train presentation techniques (e.g. ‘why-what-how’), how to reach the audience, and how to deliver take-home messages that the audience can keep in mind. Writing a scientific report is meant to practice how to draft text that complies with scientific and ethical standards. A relevant aspect in that is reproducibility.

Content of teaching

Contents of the lecture and the seminar touch upon topics that are rooted in data science (such as ‘deep learning’, ‘blockchain’ or graph databases) that play an ever more crucial, if not decisive role in modern biomedicine and healthcare.
Further examples are artificial intelligence, and here in particular (deep) machine learning for targeted clinical decision support, the aforementioned blockchain techniques (which, in other words, reflect bitcoin techniques applied for safe and efficient sharing of ethically critical patient data), genomics, internet of things, robotics, graph databases, ambient computing and visualization. For actual reasons, epidemiological methodology for analysis and control of epidemics can play an important role as well.

Recommended previous knowledge

English version basic knowledge of algorithms, data structures and artificial intelligence are required. Moreover, depending on the particular topics covered, basic knowledge of machine learning, big data analysis, DNA/RNA sequencing and fundamental statistics are useful.

Necessary requirements

Explanation regarding the elements of the module

The examination can also be ungraded in some degree programmes. A determination must be made; subsequent changes are excluded. If 'ungraded', the module cannot be included in the overall grade calculation.

Module structure: 1 SL, 0-1 bPr, 0-1 uPr 1

Courses

Selected lecture
Type lecture
Regular cycle WiSe&SoSe
Workload5 60 h (30 + 30)
Selected seminar or project
Type project o. seminar
Regular cycle WiSe&SoSe
Workload5 120 h (30 + 90)
LP 4 [SL]
Tutorial (in connection with lecture/seminar)
Type exercise
Regular cycle WiSe&SoSe
Workload5 60 h (30 + 30)
LP 2

Study requirements

Allocated examiner Workload LP2
Teaching staff of the course Selected seminar or project (project o. seminar)

Presentation (20-45min) or practical work and seminar paper (8-15 pages)

see above see above

Examinations

portfolio with final examination
Allocated examiner Teaching staff of the course Selected lecture (lecture)
Weighting without grades
Workload 60h
LP2 2

Portfolio with final examination
(Description see below)

portfolio with final examination
Allocated examiner Teaching staff of the course Selected lecture (lecture)
Weighting 1
Workload 60h
LP2 2

Portfolio with final examination

Portfolio of homework assignments accompanying the lecture, usually given weekly, and final written exam (90 min) or oral exam (15-25 min). The assignments complement and deepen the content of the lecture. Participation in the exercises (explaning solutions of assignments twice upon request). The lecturer may replace parts oft he homework assignments by attendance
assignments. Proof of a sufficient amount of correctly solved assignments (usually 50% of the maximum total score in the semester). The final exam covers the content of the lecture and the assignments, and serves for grading. The lecturer announces at the beginning oft he lecture whether the module is concluded by a written or an oral exam.

Further notices

The module can be recognised in the following compulsory optional subject areas (WP):
- WP in the subject Bioinformatics and Genome Research (Bachelor)
- WP in Bioinformatics and Genome Research (Master)
- StruktErg in KF Informatics (Bachelor)
- WP in KF Computer Science, Bioinformatics profile
- WP in NF Computer Science, Practical Computer Science profile
- WP in Informatics in the Natural Sciences (Master)

The module is used in these degree programmes:

Degree programme Version Profile Recom­mended start 3 Duration Manda­tory option 4
Bioinformatics and Genome Research / Bachelor of Science [FsB vom 30.09.2016 mit Änderungen vom 15.09.2017, 02.05.2018, 01.07.2019 und 16.08.2021] Bachelor with One Core Subject (Academic) 5. o. 6. one or two semesters Compul­sory optional subject
Bioinformatics and Genome Research / Master of Science [FsB vom 30.09.2016 mit Änderungen vom 15.09.2017, 02.05.2018, 04.06.2020 und 31.03.2023] 1. o. 2. one or two semesters Compul­sory optional subject
Data Science / Master of Science [FsB vom 06.04.2018 mit Änderungen vom 01.07.2019, 02.03.2020, 21.03.2023 und 10.12.2024] Variante 1 3. o. 4. one or two semesters Compul­sory optional subject
Data Science / Master of Science [FsB vom 06.04.2018 mit Änderungen vom 01.07.2019, 02.03.2020, 21.03.2023 und 10.12.2024] Variante 2 3. o. 4. one or two semesters Compul­sory optional subject
Courses offered for the Individual Subsidiary Subjects / Individueller Ergänzungsbereich im Bachelor Technische Fakultät 3. o. 5. one or two semesters Compul­sory optional subject
Informatics / Bachelor of Science [FsB vom 04.06.2020 mit Änderung vom 15.12.2021] Major Subject (Academic) Bioinformatics 5. o. 6. one or two semesters Compul­sory optional subject
Informatics / Bachelor of Science [FsB vom 04.06.2020 mit Änderung vom 15.12.2021] Major Subject (Academic) Strukturierte Ergänzung des Profils Bioinformatik KF (fw) 5. o. 6. one or two semesters Compul­sory optional subject
Informatics / Bachelor [FsB vom 04.06.2020 mit Änderung vom 15.12.2021] Minor Subject (Academic), 60 CPs Practical Informatics 5. o. 6. one or two semesters Compul­sory optional subject
Informatics for the Natural Sciences / Master of Science [FsB vom 30.09.2016 mit Berichtigung vom 10.01.2017 und Änderungen vom 15.09.2017, 02.05.2018, 04.06.2020 und 31.03.2023] 1. o. 2. one or two semesters Compul­sory optional subject
Faculty of Technology - Courses offered for the Individual Subsidiary Subjects / Individueller Ergänzungsbereich im Bachelor 3. o. 5. one or two semesters Compul­sory optional subject

Automatic check for completeness

The system can perform an automatic check for completeness for this module.


Legend

1
The module structure displays the required number of study requirements and examinations.
2
LP is the short form for credit points.
3
The figures in this column are the specialist semesters in which it is recommended to start the module. Depending on the individual study schedule, entirely different courses of study are possible and advisable.
4
Explanations on mandatory option: "Obligation" means: This module is mandatory for the course of the studies; "Optional obligation" means: This module belongs to a number of modules available for selection under certain circumstances. This is more precisely regulated by the "Subject-related regulations" (see navigation).
5
Workload (contact time + self-study)
SoSe
Summer semester
WiSe
Winter semester
SL
Study requirement
Pr
Examination
bPr
Number of examinations with grades
uPr
Number of examinations without grades
This academic achievement can be reported and recognised.